SubtiBank SubtiBank
yndE [2018-02-12T14:45:16.000Z]
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yndE [2018-02-12T14:45:16.000Z]

part of the YndD-YndE-YndF germinant receptor of unknown specificity
locus
BSU17760
pI
9.09
mw
40.31 kDa
protein length
363 aa Sequence Blast
gene length
1089 bp Sequence Blast
function
germination
product
part of the YndD-YndE-YndF germinant receptor
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.1|Amino acid transporters] → [category|SW 1.2.4.1.4|APC superfamily]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.5|Germination/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,909,086 → 1,910,177

    The protein

    Paralogous protein(s)

  • [protein|5FF739B8C087207039BB6DC293EE77F59337ED0B|GerAB], [protein|D70EC7C02BC79BED724489ABCB6356447F215B87|GerBB], [protein|D1AFCB1BE693AB6B8461B7764B6641E6EB1404FA|GerKB]

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|AE28299B0F274B189DD90554A5A4F7B9A9479B60|yndD]-[gene|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|yndE]-[gene|2211659780DEC3F4131B127E68EEF626534DF4BE|yndF]
    description
    [Pubmed|16497325]

    sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190,16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

    • regulation

  • expressed late during sporulation in the forespore ([protein|search|SigG]) [Pubmed|15699190,16497325]
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    Biological materials

    Mutant

  • MGNA-A023 (yndE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/23 NBRP B. subtilis, Japan]
  • BKE17760 (Δ[gene|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|yndE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17760 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAGACTTTATCACCATC, downstream forward: _UP4_GTCATTTCGAAATGGAGGAA
  • BKK17760 (Δ[gene|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|yndE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17760 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAGACTTTATCACCATC, downstream forward: _UP4_GTCATTTCGAAATGGAGGAA

    • References

  • 15699190,16497325,10762253